Which GST office handles IT companies in Pune?

The GST Commissionerate, Pune handles all GST-related matters for IT and software companies operating in Pune. LUT applications, refund claims, and assessment proceedings for IT companies in Hinjewadi, Kharadi, and Magarpatta fall under this commissionerate. All filings are processed through the GST portal with jurisdictional mapping to Pune division offices.

Can I get IT software accounting done online from Pune?

Yes. Patron Accounting provides fully digital IT accounting services for Pune companies. GST filing, TDS compliance, LUT filing, and Maharashtra Professional Tax returns are all handled online by your dedicated CA. Pune clients can also visit Patron's office at RTC Silver, Wagholi for in-person consultations.

What is the IT software accounting fee in Pune?

IT software accounting fees in Pune start from Rs 2,999 per month for startups and early-stage companies. Growth-stage IT companies with 11-50 employees can expect fees around Rs 7,999 per month. Enterprise packages for companies with 50 or more employees start at Rs 14,999 per month.

How long does IT company accounting onboarding take in Pune?

Patron Accounting onboards new IT companies in Pune within 48 hours. A dedicated CA is assigned immediately, document collection begins on day one, and the first compliance cycle starts within the same week. Monthly GST, TDS, and Maharashtra PT compliance runs on autopilot from the second month.

Do IT companies in Pune need PTRC registration?

Yes. Under the Maharashtra State Tax on Professions Act 1975, every IT company in Pune employing staff earning above Rs 7,500 per month must obtain PTRC and deduct professional tax from salaries. PTEC at Rs 2,500 per year is separately required for the company entity.

Is Section 80-IAC available for Pune IT startups?

Yes. DPIIT-registered IT startups in Pune can claim 100 percent profit deduction under Section 80-IAC for 3 consecutive years out of the first 10 years from incorporation. The startup must be incorporated as a company or LLP with turnover not exceeding Rs 100 crore in any financial year.

What is the TDS rate for IT services under Section 194J?

Section 194J prescribes 2 percent TDS on fees for technical services such as IT support and AMC, and 10 percent TDS on professional consulting fees above Rs 50,000 per year. The distinction was clarified by CBDT in October 2024 and applies to all IT company payments in Pune.

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IT Software Accounting Services in Pune: CA-Managed Compliance for Tech Companies

Q: How does LUT filing work for IT exporters in Pune?

IT companies in Pune exporting software services must file Form GST RFD-11 before the first export invoice of each financial year. The LUT enables zero-rated export without upfront IGST. All five conditions under Section 2(6) of the IGST Act must be met. Patron handles annual LUT renewal and FIRC tracking. Quick Answers GST rate on IT services? 18% under SAC 9983 for domestic. Zero-rated via LUT for exports. IT company ka GST kitna lagta hai Pune mein? Domestic services pe 18% GST. Export pe zero under LUT. TDS on software payments? 2% technical (194J), 10% professional. Above Rs 50,000/year threshold. Pune mein IT company ka accounting kaise karein? Patron Accounting se Rs 2,999/month se start. Dedicated CA assigned. Maharashtra Professional Tax IT companies ke liye? PTRC mandatory if employees earn above Rs 7,500/month. Rs 2,500/year PTEC for company.

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Documents: PAN, GST certificate, Udyam certificate, bank statements, invoices, FIRC for exporters

Fees: Starting from Rs 2,999/month for IT companies in Pune

Eligibility: All IT, SaaS, software product, and tech services companies operating from Pune

Timeline: Onboarding in 48 hours; monthly compliance cycle thereafter

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Patron's LUT filing and export compliance has been flawless. We export to 12 countries and every invoice is zero-rated correctly. Their quarterly RCM health check caught Rs 3 lakh in missed ITC on our AWS billing.

Vikram Shah

CTO, SaaS Company, Hinjewadi

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Our GST filing is always on time since we moved to Patron. The CA team knows their stuff cold. Highly recommended for IT companies.

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CFO, Product Company, Kharadi

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3 months ago

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48-hour onboarding was exactly what we needed. We were scaling fast and needed a CA who could keep up. Patron assigned a dedicated person immediately.

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Founder, Tech Startup, Baner

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The PTRC compliance was something we had completely overlooked. Patron caught it during onboarding and regularised it within a week. Saved us from penalties.

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HR Head, IT Services, Magarpatta

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4 months ago

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Excellent service for company registration and compliance. The team is very responsive and handles everything end to end.

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Director, Demandify Media

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Overview What Is It Who Needs It Services Process Documents Challenges Fees Timeline Why Patron Comparison FAQs

IT Software Accounting in Pune: Specialist CA Services for the City's 4,000+ Tech Companies

📌 TL;DR - IT Software Accounting Services at a Glance

IT and software companies in Pune must manage 18% GST under SAC 9983 for domestic services, zero-rated exports via LUT under Rule 96A, TDS deductions under Section 194J at 2% or 10%, Maharashtra Professional Tax (PTRC + PTEC) compliance, and startup tax benefits under Section 80-IAC. Patron Accounting provides dedicated CA services for Pune IT companies from Rs 2,999/month.

Pune is India's second-largest IT hub after Bangalore, with Hinjewadi IT Park and Kharadi IT Park together housing over 800 technology companies. The GST Commissionerate, Pune oversees indirect tax compliance for every software firm operating from Rajiv Gandhi Infotech Park through Magarpatta Cybercity. Learn more about IT software accounting services across India.

Parameter	Detail
Governing Act	Income Tax Act 1961, CGST Act 2017, Maharashtra PT Act 1975
Applicable To	IT, SaaS, software product, tech services companies in Pune
Timeline	Monthly GST by 11th/13th/20th; TDS by 7th; PT by 15th
Cost Starting From	Rs 2,999/month (Patron Accounting)
Penalty	Rs 50/day GST late fee; 1.5%/month TDS interest under Section 201
Key Forms/Portals	GSTR-1, GSTR-3B, Form 26Q, Form 3CEB, gst.gov.in, mahagst.gov.in
Jurisdictional Office	GST Commissionerate, Pune; RoC Pune

Under the Maharashtra State Tax on Professions, Trades, Callings and Employments Act 1975, every IT company in Pune employing staff above Rs 7,500/month must obtain PTRC registration and deduct professional tax from salaries. The penalty for late GST return filing is Rs 50 per day up to Rs 10,000 per return under Section 47 of the CGST Act. IT exporters who fail to file LUT before the first export invoice risk losing zero-rated status. Patron Accounting's Pune office at RTC Silver, Wagholi serves the IT corridor from Hinjewadi to Kharadi.

Content is reviewed quarterly for accuracy.

What Is IT Software Accounting?

IT software accounting is specialist financial management for technology companies covering GST compliance, TDS on vendor and consultant payments under Section 194J of the Income Tax Act 1961, startup tax planning, transfer pricing documentation, and statutory audits under the Companies Act 2013.

Under the CGST Act 2017, domestic IT services attract 18% GST classified under SAC Code 9983. Software exports from Pune qualify for zero-rated treatment through a Letter of Undertaking (LUT) under Rule 96A, provided all five conditions under Section 2(6) of the IGST Act 2017 are met. The distinction matters for Pune's large export-focused IT companies in Hinjewadi and Kharadi.

For Pune's IT ecosystem - from early-stage SaaS startups in Baner to established MNC captive centres in Magarpatta Cybercity - accounting goes beyond standard bookkeeping. It includes Ind AS 115 revenue recognition for milestone-based contracts, ESOP valuation under Section 17(2)(vi) for funded startups, and transfer pricing documentation under Section 92D for companies with overseas parent entities.

Key Terms for IT Software Accounting:

SAC Code 9983: Service Accounting Code for IT and software services under GST at 18% covering development, consulting, SaaS, and technical support.
LUT (Letter of Undertaking): Form GST RFD-11 under Rule 96A enabling zero-rated export without upfront IGST payment. Annual filing.
Section 194J TDS: 2% on technical services (IT support, AMC, call centre) and 10% on professional consulting above Rs 50,000/year.
PTRC (Maharashtra): Professional Tax Registration Certificate required for Pune IT employers with employees earning above Rs 7,500/month.
Section 80-IAC: 100% profit deduction for DPIIT-registered startups for 3 consecutive years out of first 10 years from incorporation.
Form 3CEB: Transfer pricing audit report for companies with international transactions, due 31 October annually.

IT Sector Pune Tech

Who Needs IT Software Accounting Services in Pune?

Software Development Companies: Companies in Rajiv Gandhi Infotech Park operating on domestic projects charge 18% GST under SAC 9983. Those exporting to overseas clients must file LUT annually and maintain FIRC documentation for every export invoice.

SaaS and Product Companies: Pune's SaaS ecosystem in Baner and Koregaon Park must navigate subscription revenue recognition under Ind AS 115 and determine whether cloud hosting qualifies as OIDAR services.

IT Services Exporters: Hinjewadi-based IT exporters serving US and European clients must ensure all five conditions under Section 2(6) of the IGST Act 2017 are met for valid zero-rated treatment via LUT.

Global Capability Centres (GCCs): MNC captive units in EON Free Zone Kharadi and Cerebrum IT Park require transfer pricing documentation under Section 92D and Form 3CEB filing by 31 October.

Tech Startups: DPIIT-registered startups in Pune can claim Section 80-IAC tax holiday. ESOP taxation under Section 17(2)(vi) must be handled correctly. GST registration is mandatory once turnover crosses Rs 20 lakh.

IT Software Accounting Services: What Patron Covers

Service	What We Do
Monthly GST Compliance	GSTR-1 by 11th, GSTR-3B by 20th, ITC reconciliation for Pune IT companies with domestic and export invoices
LUT Filing and Export Documentation	Annual Form GST RFD-11, FIRC tracking, Table 6A reporting for Hinjewadi and Kharadi IT exporters
TDS Compliance	Quarterly Form 26Q, Section 194J classification (2% vs 10%), Form 16A for IT vendors and consultants
Maharashtra Professional Tax	PTRC registration, monthly/annual return filing, PTEC payment for directors - specific to Pune IT employers
Startup Tax Planning	Section 80-IAC application, DPIIT recognition support, Angel Tax exemption under Section 56(2)(viib)
Transfer Pricing Documentation	Section 92D documentation and Form 3CEB preparation for GCCs and MNC subsidiaries in Pune
Statutory Audit	Companies Act 2013 audit, CARO 2020 reporting, Ind AS compliance for Pune software companies
Payroll and ESOP Accounting	Monthly payroll with PF/ESI, ESOP perquisite valuation under Section 17(2)(vi), Form 16

Our Process

How IT Software Accounting Works in Pune

Our 7-step process covers the complete IT company compliance lifecycle - from GST/LUT setup through monthly filing, Maharashtra PT, quarterly reviews, and annual audit coordination.

Step 1

Initial Assessment and Pune-Specific Compliance Check

Patron's Pune CA team reviews your company's GST registration status with the GST Commissionerate, Pune, PTRC/PTEC registration on mahagst.gov.in, TDS compliance history, and pending filings. For startups in Hinjewadi or Baner, this includes verifying DPIIT recognition and Section 80-IAC eligibility.

GST status verifiedPTRC/PTEC checkedDPIIT eligibility reviewed

Assessment Done 01

Step 2

Document Collection and System Integration

Your dedicated CA collects PAN, GST certificate, bank statements, sales invoices, purchase records, and FIRC copies (for exporters). Pune IT companies using Zoho Books, Tally, or QuickBooks get direct integration with Patron's compliance workflow.

Documents collectedSoftware integratedFIRC tracking started

Docs Collected 02

Step 3

GST Classification and LUT Verification

The CA verifies correct SAC code application (9983 for IT services) and checks LUT validity for the current financial year. For Pune SaaS exporters, this includes confirming export invoices meet all five conditions under Section 2(6) of the IGST Act 2017.

SAC 9983 verifiedLUT validity confirmedExport conditions checked

GST Classified 03

Step 4

Monthly Filing and TDS Processing

GSTR-1 filed by 11th, GSTR-3B by 20th, TDS deposited by 7th of each month. For IT companies in Pune with subcontractor payments, Section 194J classification is applied - 2% for technical services, 10% for professional consulting.

GSTR-1 by 11thGSTR-3B by 20thTDS by 7th

Monthly Filed 04

Step 5

Maharashtra Professional Tax Compliance

PTRC returns filed monthly (if annual PT liability exceeds Rs 50,000) or annually on mahagst.gov.in. For Pune IT companies with 50+ employees, this is typically monthly filing by the 15th. PTEC payment of Rs 2,500/year for the company entity by 15th June.

PTRC returns filedPTEC paid annuallyMonthly by 15th

PT Compliant 05

Step 6

Quarterly Review and Statutory Reporting

Quarterly TDS return (Form 26Q) filed by due date. ITC reconciliation with GSTR-2A/2B. For Pune GCCs with transfer pricing obligations, Form 3CEB preparation begins in Q2 for 31 October deadline. Advance tax instalments computed.

Form 26Q filedITC reconciledAdvance tax computed

Review Done 06

Step 7

Annual Compliance and Audit Closure

Annual GST return (GSTR-9), statutory audit under Companies Act 2013, tax audit under Section 44AB, ITR-6 filing, and Form 3CEB submission. Patron's Pune team ensures all filings with RoC Pune and Income Tax Department are completed before statutory deadlines.

GSTR-9 filedStatutory audit doneITR-6 submitted

Year Closed 07

Documents Required for IT Software Accounting in Pune

Company PAN Card: Mandatory for all tax filings with the Income Tax Department.
GST Registration Certificate: Confirms active registration under GST Commissionerate, Pune.
PTRC and PTEC Certificates: Maharashtra Professional Tax certificates from mahagst.gov.in - required for all Pune IT employers.
Bank Statements: 12-month statements for reconciliation and ITC verification.
Sales and Purchase Invoices: All domestic and export invoices with correct SAC codes.
FIRC/BRC Copies: Foreign Inward Remittance Certificates for IT export companies in Hinjewadi and Kharadi.
ESOP Grant Letters: For funded startups - required for perquisite valuation under Section 17(2)(vi).
DPIIT Recognition Certificate: If claiming Section 80-IAC tax holiday.
Transfer Pricing Documents: International transaction details for GCCs - required for Form 3CEB.

Pune-Specific Tip: For IT companies operating from SEZ units in Rajiv Gandhi Infotech Park, Hinjewadi, include the SEZ approval letter and bond/LUT copies for customs and GST exemption claims.

Common IT Accounting Challenges in Pune

Challenge	Impact	How Patron Accounting Solves It
Incorrect TDS Classification (194C vs 194J)	Notices from PCIT Pune for wrong TDS rate on IT vendor payments	Systematic Section 194J classification - 2% technical, 10% professional - with quarterly 26Q reconciliation
LUT Filing Delays for SaaS Exporters	18% IGST upfront on every export invoice, causing cash flow disruption	Annual LUT renewal before first export of FY; FIRC tracking; Table 6A reconciliation for Pune exporters
Maharashtra PTRC Non-Compliance	Penalties for IT startups in Baner/Wakad missing registration threshold	Proactive PTRC monitoring from first employee hire; monthly returns filed by 15th
RCM on Imported SaaS Tools	Missed 18% IGST self-assessment on AWS, Google Cloud, Azure for Pune IT firms	Automated RCM tracking for imported services under Notification 10/2017-IT with ITC claim
Transfer Pricing Risk for GCCs	Rs 1,00,000 penalty for late Form 3CEB under Section 271BA	Section 92D documentation started in Q2; Form 3CEB filed before 31 October deadline

IT Software Accounting Fees in Pune

Fee Component	Amount
Startup Package (0-10 employees)	Rs 2,999/month
Growth Package (11-50 employees)	Rs 7,999/month
Enterprise Package (50+ employees)	Rs 14,999/month
GCC/Transfer Pricing Add-on	Rs 49,999/year
Statutory Audit (Companies Act)	Rs 24,999 onwards
Maharashtra PTEC (Statutory)	Rs 2,500/year per entity

All fees and charges listed are indicative only and do not constitute a binding offer. Final amounts may vary depending on the volume of work and the complexity involved.

Professional service charges for drafting, filing, and representation are separate from the statutory fees. The exact fee depends on the complexity of the case, disputed amount, and number of hearings required. Contact us for a detailed quote.

Get a free IT Software Accounting consultation - Call +91 945 945 6700 or WhatsApp us. No-obligation assessment.

IT Software Accounting Timeline: Key Deadlines

Stage	Estimated Timeline
GSTR-1 (Outward supplies)	11th of following month
GSTR-3B (Summary return)	20th of following month
TDS Deposit	7th of following month
TDS Return (26Q)	31 Jul / 31 Oct / 31 Jan / 31 May
Maharashtra PT (PTRC)	15th of following month (monthly) / 15th March (annual)
Maharashtra PT (PTEC)	15th June annually
LUT Filing (Form RFD-11)	Before first export of FY
Form 3CEB (Transfer Pricing)	31 October
ITR-6 / Tax Audit	31 October (audit) / 31 July (non-audit)
Advance Tax	15 Jun / 15 Sep / 15 Dec / 15 Mar

Pune Processing Note: No visit to the GST Commissionerate, Pune or RoC Pune required. Patron's Pune office at RTC Silver, Wagholi handles all filings digitally. Walk-in consultations available for IT companies in Hinjewadi, Kharadi, Baner, and Wakad. Pune IT companies with turnover above Rs 5 crore must generate e-invoices on the IRP portal.

Key Benefits

Why Choose Patron for IT Accounting in Pune

Pune Office Presence

RTC Silver, Wagholi - serves IT companies across Hinjewadi, Kharadi, Baner, Wakad, Magarpatta, and Viman Nagar. Walk-in consultations available.

400+ IT Clients

Patron serves 400+ IT and software companies across India with deep expertise in GST export compliance, Section 194J TDS, and startup tax planning.

Jurisdictional Familiarity

Regular filings with GST Commissionerate Pune, PCIT Pune, and RoC Pune. We understand local processing timelines and officer preferences.

48-Hour Onboarding

New IT companies in Pune get a dedicated CA assigned within 48 hours. First compliance cycle begins immediately.

Trusted by IT Companies Across India

Trust Banner: 10,000+ Businesses | 4.9 Google Rating | 50,000+ Documents Filed | 15+ Years

With offices in Pune, Mumbai, Delhi, and Gurugram, Patron serves 400+ IT companies across India. Trusted by Hyundai, Asian Paints, Bridgestone, and growing tech startups.

DIY vs Professional IT Software Accounting in Pune

Aspect	Patron CA-Managed	DIY Accounting
GST Filing	CA-filed with SAC 9983 verification and ITC reconciliation	Self-filed; risk of SAC code errors
TDS Compliance	Automated 194J classification with quarterly 26Q filing	Manual classification; frequent 194C errors
LUT Management	Annual LUT + FIRC tracking + Table 6A reconciliation	Annual filing only; no FIRC tracking
Maharashtra PT	PTRC/PTEC managed with monthly return filing by Pune CA	Self-managed on mahagst.gov.in
Cost	From Rs 2,999/month with dedicated CA	Free (time investment) but penalty risk
Risk	Compliance guaranteed with CA accountability	Notices from GST Commissionerate Pune; TDS penalties

Related Services for IT Companies in Pune

IT companies in Pune often need complementary compliance services:

IT Software Accounting Services (India) - National overview covering compliance for tech companies across India.
Accounting Services - General accounting for businesses of all types.
GST Registration - New GST registration for IT companies setting up in Pune.
GST Returns Filing - GSTR-1, GSTR-3B, GSTR-9 filing services.
Income Tax Return Filing - ITR-6 for companies and ITR-4 for IT freelancers.
TDS Return Filing - Quarterly 26Q and 24Q for IT companies.
Payroll Services - Monthly payroll with PF, ESI, and ESOP perquisite management.
Statutory Audit - Companies Act audit and CARO 2020 reporting.

Legal and Compliance Framework for IT Accounting in Pune

Governing Acts:

CGST Act 2017 and IGST Act 2017: SAC Code 9983 at 18% for IT services. Section 2(6) IGST Act defines export of services. Rule 96A enables zero-rated exports via LUT.
Income Tax Act 1961: Section 194J (TDS on technical/professional services), Section 80-IAC (startup tax holiday), Section 115BAC (new tax regime), Sections 92-92F (transfer pricing).
Maharashtra PT Act 1975: PTRC for employers with employees above Rs 7,500/month. PTEC at Rs 2,500/year. Revised due dates: 15th of following month per Feb 2026 amendment.
Companies Act 2013: Statutory audit mandatory for all companies. CARO 2020. Annual filing with RoC Pune.

Penalties:

Late GST return: Rs 50/day (Section 47 CGST Act) up to Rs 10,000
Late TDS deposit: 1.5%/month interest under Section 201 IT Act
Late PTRC: Penalty under Section 6(2) Maharashtra PT Act
Late Form 3CEB: Rs 1,00,000 penalty under Section 271BA

External Authority Links: GST Portal | Maharashtra GST Portal

Frequently Asked Questions: IT Software Accounting in Pune

Get answers to common questions about GST, TDS, LUT, Maharashtra Professional Tax, and compliance for IT companies in Pune.

Quick Answers

GST rate on IT services? 18% under SAC 9983 for domestic. Zero-rated via LUT for exports.

IT company ka GST kitna lagta hai Pune mein? Domestic services pe 18% GST. Export pe zero under LUT.

TDS on software payments? 2% technical (194J), 10% professional. Above Rs 50,000/year threshold.

Pune mein IT company ka accounting kaise karein? Patron Accounting se Rs 2,999/month se start. Dedicated CA assigned.

Maharashtra Professional Tax IT companies ke liye? PTRC mandatory if employees earn above Rs 7,500/month. Rs 2,500/year PTEC for company.

Deadlines and Penalties: Why Timely IT Accounting Matters in Pune

Missing the 20th of the month GSTR-3B deadline costs Rs 50 per day in late fees under Section 47, CGST Act 2017. Late TDS deposit attracts 1.5% monthly interest under Section 201 of the Income Tax Act. For Pune IT exporters, operating without a valid LUT means paying 18% IGST upfront on every export invoice - a significant cash flow hit for companies in Hinjewadi processing lakhs in monthly export billing.

Get started with IT accounting - Call +91 945 945 6700 or WhatsApp us.

Get Started with IT Software Accounting in Pune

IT software accounting services in Pune cover the complete compliance lifecycle - from GST and LUT filing for Hinjewadi exporters to TDS compliance for Kharadi product companies, Maharashtra Professional Tax for every IT employer, and startup tax planning for Baner's growing SaaS ecosystem.

Patron Accounting's Pune office at RTC Silver, Wagholi provides dedicated CA support for IT companies across the city's technology corridors. With 400+ IT clients served nationally and deep familiarity with the GST Commissionerate Pune, PCIT Pune, and RoC Pune, Patron delivers compliance accuracy that protects your company from penalties.

With 15+ years of experience, 50,000+ documents filed, and a 4.9 Google rating, Patron Accounting LLP provides the specialist IT accounting that Pune tech companies need.

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Content Created: 18 March 2026 | Last Updated: 18 March 2026 | Next Review: 18 June 2026 | Reviewed By: CA & CS Team, Patron Accounting LLP

This page covers IT software accounting services in Pune. Content reviewed quarterly (Freshness Tier 1) reflecting CBIC notifications, Finance Act amendments, Maharashtra PT rule changes, and TDS rate changes affecting IT companies.

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