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IT Notice Under Section 143(3) in Pune - Scrutiny Assessment Response and Defence

Reviewed by CA and CS Team, Patron Accounting LLP ICAI & ICSI Registered| 15+ Years Experience| Last Updated: 23 March 2026 Verify Credentials →

What It Is: Section 143(3) is the scrutiny assessment order passed by the AO after detailed examination of your ITR, initiated by a notice under Section 143(2)

Documents: ITR + computation, Form 26AS, AIS/TIS, TDS certificates, bank statements, investment proofs, expense records, balance sheet, P&L, audit report

Timeline: 143(2) notice within 3 months from end of FY of filing | 143(3) order within 12 months from end of AY | Appeal: Form 35 within 30 days

Non-Response Risk: Best judgment assessment (S.144), penalty S.271(1)(b)/272A, interest S.234A/B/C, prosecution S.276D

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My HRA of Rs 4.8 lakh was questioned in limited scrutiny. Patron submitted rental agreement, landlord PAN, 12 months of bank transfers, and landlord ITR excerpt. The AO accepted the claim in one round - zero additions. Without professional help I might have lost the entire HRA deduction.
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Aditya Kelkar
IT Professional - Kharadi
★★★★★
1 month ago
Our electronics trading firm in Camp faced complete scrutiny for Rs 25 lakh cash deposits. The AO wanted to treat it all as Section 68 unexplained income. Patron prepared a detailed cash book with GST reconciliation showing every deposit was from business sales. The addition was reduced from Rs 25 lakh to zero. Expert defence.
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Rajesh Deshpande
Trader - Camp
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2 months ago
Our MIDC manufacturing company faced a Rs 2 crore transfer pricing adjustment. Patron prepared comprehensive TP documentation with benchmarking, filed DRP objections, and the panel reduced the adjustment to Rs 15 lakh. The professional fee was a tiny fraction of the Rs 1.85 crore tax saved.
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Sneha Patil
CFO, Manufacturing - MIDC Bhosari
★★★★★
3 months ago
As a freelance consultant in Baner, my 62% expense ratio was flagged for scrutiny. Patron submitted detailed expense breakdowns - co-working space rent, laptop depreciation, travel to client sites, internet, and subcontracting invoices. The AO accepted the expenses fully after the documented submission. No additions, no penalty.
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Manish Joshi
Freelance Consultant - Baner
★★★★★
4 months ago

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IT Notice Under Section 143(3) in Pune - Overview

📌 TL;DR - IT Notice Under Section 143(3) in Pune Services at a Glance

A scrutiny assessment under Section 143(3) of the Income Tax Act is a detailed examination of your income tax return by the Assessing Officer. The process begins when your return is selected for scrutiny (via CASS) and a notice is issued under Section 143(2). You must submit documents, explanations, and evidence through e-Proceedings on incometax.gov.in (faceless assessment under Section 144B). The AO passes a final assessment order under Section 143(3), which may accept your return, make additions, disallow deductions, or compute additional tax. If the order results in a demand, a notice under Section 156 is issued. You can appeal to CIT(A) via Form 35 within 30 days.

Pune taxpayers across profiles face scrutiny. Hinjewadi and Kharadi IT professionals are selected when CASS flags high HRA claims, large 80C/80D deductions, or income-26AS mismatches. Camp and Deccan traders face complete scrutiny for cash deposits and GST-ITR discrepancies. MIDC manufacturers face transfer pricing scrutiny. Under the Faceless Assessment Scheme (Section 144B), all proceedings are digital through NFAC. Learn more about IT Notice Under Section 143(3) across India.

All notices, queries, and submissions flow through the e-Proceedings tab on incometax.gov.in. Professional representation is critical as every written submission becomes the permanent record. After scrutiny, taxpayers benefit from Income Tax Notice in Pune and Accounting Services.

Content is reviewed quarterly for accuracy.

How Scrutiny Selection Works (CASS)

Returns are selected through CASS (Computer Assisted Scrutiny Selection) based on risk parameters defined by CBDT. Limited Scrutiny is restricted to the specific issue in the notice - AO cannot expand scope without PCIT approval. Complete Scrutiny covers the entire return - all income sources, deductions, expenses, and credits.

Common CASS triggers for Pune: High-value transactions (SFT/AIR) for Camp traders with Rs 10 lakh+ cash deposits; Income-AIS mismatch for Hinjewadi salaried with AIS income higher than ITR; Large deductions for Kharadi employees with 80C + 80D + HRA exceeding 40% of salary; GST-ITR turnover mismatch for Deccan retailers; Transfer pricing for MIDC manufacturers with international transactions > Rs 1 crore.

Receiving a scrutiny notice does not mean wrongdoing - it is a verification process. CASS also makes random selections. The key is to respond thoroughly and on time.

Key Terms for IT Notice Under Section 143(3) in Pune:

Section 143(2): Scrutiny notice. Must be issued within 3 months from end of FY of return filing. Notice beyond this is time-barred and invalid.

Section 143(3): Final assessment order by AO after examining all evidence. Must be passed within 12 months from end of AY (Section 153).

Section 144B: Faceless Assessment Scheme. All scrutiny via NFAC - digital, anonymous, DIN-tracked. Never meet AO in person.

Section 144: Best Judgment Assessment if taxpayer fails to comply. Results in inflated income and high demand.

Appeal Path: 143(3) order > CIT(A)/JC(A) Form 35 within 30 days > ITAT Pune Bench within 60 days > High Court > Supreme Court. DRP available for TP/non-resident draft orders.

APL-05 IT Notice Under Section 143(3) in Pune
Faceless Assessment Section 144B

Who Faces Scrutiny Assessment in Pune

Salaried IT Professionals (Hinjewadi, Kharadi, Viman Nagar) - Selected for limited scrutiny when HRA claim exceeds reasonable proportion, 80C/80D deductions are unusually large, capital gains from stock/MF not properly reported, or AIS shows income not in ITR. See ITR for Salary in Pune.

Traders and Retailers (Camp, Deccan) - Complete scrutiny for cash deposits > Rs 10 lakh, GST turnover differing from ITR income, large SFT purchases/sales not in return. See ITR for Business in Pune.

Manufacturers (MIDC Bhosari, MIDC Chakan) - Complete scrutiny for transfer pricing issues, high depreciation, inventory valuation, export incentives. See ITR for Companies in Pune.

Freelancers and Consultants (Baner, Koregaon Park) - Limited or complete scrutiny for high expense ratios, loss despite significant receipts, Section 44ADA issues.

NRIs with Pune Property - Scrutiny on capital gains computation, TDS compliance, reinvestment claims under Section 54/54EC, and DTAA benefits.

Scrutiny Assessment Response Services in Pune

ServiceWhat We Do
Scrutiny Notice Review + StrategyReview 143(2) notice, identify limited vs complete scrutiny, analyse flagged issues, develop response strategy
e-Proceedings RepresentationRepresent through e-Proceedings on incometax.gov.in for all faceless assessment proceedings under Section 144B; uploading, drafting, virtual hearings
Document Compilation + SubmissionCompile, organise, and index all required documents: ITR, 26AS, AIS, TDS certificates, bank statements, investment proofs, expense vouchers, audit reports
Assessment Order Review + AppealReview 143(3) order for unjustified additions; prepare and file Form 35 (CIT(A)/JC(A)) within 30 days; apply for stay of demand (20% per CBDT instruction)
Transfer Pricing DefenceTP documentation, benchmarking analysis, representation before TPO and DRP for MIDC and Hinjewadi companies with international transactions
Penalty Proceedings DefenceDefence against Section 270A penalties (50%/200% of tax) by demonstrating bona fide conduct, voluntary disclosure, or absence of mens rea
Our Process

How to Respond to Scrutiny Assessment in Pune

6-step response guide with Patron Accounting

Step 1

Receive and Analyse the 143(2) Notice

Check incometax.gov.in > Pending Actions > e-Proceedings. Download the 143(2) notice. Identify: assessment year, type of scrutiny (limited or complete), specific issues flagged (if limited), documents requested, and response deadline (15-30 days). Verify the notice is within statutory time limit (3 months from end of FY of filing). If time-barred, raise the objection.

Limited vs Complete IdentifiedDeadline Noted
143(2)
Notice Analyzed01
Step 2

Compile Documents

Based on the notice: filed ITR + computation, Form 26AS (all tax credits), AIS/TIS from compliance portal, TDS certificates (Form 16/16A), bank statements (highlight income and major debits), investment proofs for Section 80 deductions, rent receipts with landlord PAN (HRA), balance sheet/P&L/audit report (business), sale/purchase deeds (property), and any specific documents in the notice.

All Documents IndexedAIS Reconciled
Documents Ready02
Step 3

Draft Written Submission

Prepare comprehensive reply addressing each issue in the notice. For limited scrutiny: focus only on the specific issue. For complete scrutiny: address all income heads, deductions, and credits. Include legal references, case law citations, and CBDT circulars supporting your position. Every factual claim must be backed by a document. Patron drafts with indexed annexures.

Point-by-Point ResponseLegal References Included
Submission Drafted03
Step 4

Upload on e-Proceedings Portal

Log in to incometax.gov.in > e-Proceedings. Upload written submission and all supporting documents (PDF, properly named). Each upload corresponds to a specific query. Portal assigns DIN to each communication. Save all acknowledgements and DINs. If deadline approaching, file extension/adjournment request through the portal before it expires.

Documents UploadedDIN Saved
e-Proc
Response Filed04
Step 5

Attend Virtual Hearings (If Required)

Under faceless assessment, AO may schedule virtual hearing via video conferencing. Your CA or authorised representative (Form 26) can attend on your behalf. Present your case concisely, refer to submitted documents, address AO queries, and request time for additional submissions if needed. Request written summary of hearing proceedings.

CA RepresentsHearing Attended
VC
Hearing Complete05
Step 6

Receive 143(3) Order and Decide Next Steps

AO passes assessment order under Section 143(3). May: accept returned income (no change), make additions/disallowances with higher income, or determine additional tax (demand notice S.156 issued). If no additions: retain for records. If additions and you agree: pay the demand. If you disagree: file appeal (Form 35 to CIT(A)/JC(A)) within 30 days, apply for stay of demand, prepare for appellate proceedings.

Order ReviewedAppeal Filed if Needed
Assessment Complete06

Documents Required for Scrutiny Response in Pune

For Salaried: Form 16 (all employers), Form 26AS, AIS/TIS, salary slips (HRA verification), rent receipts + landlord PAN, investment proofs (80C/80D/80E/80G), bank statements, capital gains statements, loan certificates.

For Business Owners: ITR + computation, balance sheet/P&L, tax audit report, books of accounts, bank statements (all accounts), GST returns + reconciliation, sales/purchase invoices, expense vouchers, depreciation schedule, stock register.

For Professionals/Freelancers: ITR + computation, 44ADA computation, bank statements, TDS certificates (Form 16A), client invoices, expense records.

For Property: Sale/purchase deed, registration documents, stamp duty receipt, capital gains computation, cost of acquisition evidence, Section 54/54EC investment proof.

Pune-Specific Tip: Hinjewadi IT employees under HRA scrutiny must have: (a) rent receipts for every month, (b) landlord PAN (mandatory if rent > Rs 1 lakh/year), (c) rental agreement, and (d) proof of payment (bank transfer preferred). Cash rent payments without landlord PAN are frequently disallowed in scrutiny.

Common Scrutiny Issues in Pune

ChallengeImpactHow Patron Accounting Solves It
HRA Disallowance (Salaried)Most common for Hinjewadi/Kharadi employees: landlord PAN missing, rent receipts inconsistent, rent to family member at inflated rate, HRA + home loan interest for same cityGenuine rent receipts, landlord PAN, rental agreement, bank transfer proof; demonstrate genuine tenancy arrangement
Cash Deposit Additions (Traders)Camp/Deccan traders with cash deposits > Rs 10 lakh face Section 68/69A additions (unexplained cash credits)Sales records, cash book, bank book demonstrating deposits are from business receipts; GST return reconciliation
GST-ITR Turnover MismatchGST returns show higher turnover than ITR; AO adds difference as unaccounted income; can arise from credit notes, advance billing, timingDetailed reconciliation between GST turnover and ITR income with explanatory notes for each difference
Transfer Pricing AdjustmentsMIDC/Hinjewadi companies with international transactions; TPO determines arm's length price differs from transaction priceRobust TP documentation, benchmarking study, functional analysis; appeal via DRP or CIT(A)
Capital Gains Errors (Property)NRIs/residents selling Pune property: cost of acquisition disputed, indexation incorrect, Section 54/54EC timeline not metOriginal purchase deed, payment proof for improvements, timely reinvestment evidence with bank trail

Scrutiny Assessment Response Fees in Pune

Fee ComponentAmount
Patron Accounting Professional Fees (Scrutiny Response)Starting from INR 999/mo (Exl GST and Govt. Charges)
Scrutiny Notice Review + StrategyRs 3,000 - Rs 8,000
Limited Scrutiny Response (Single Issue)Rs 5,000 - Rs 15,000
Complete Scrutiny Response (Salaried)Rs 10,000 - Rs 25,000
Complete Scrutiny Response (Business/Professional)Rs 15,000 - Rs 50,000
Complete Scrutiny Response (Company/LLP)Rs 25,000 - Rs 1,00,000
Transfer Pricing DefenceRs 50,000 - Rs 3,00,000
Appeal Filing (Form 35) Post-OrderRs 10,000 - Rs 50,000
Government FeesNo govt fee for responding. Appeal fee Rs 250-1,000. Self-assessment tax + interest if additional demand

All fees and charges listed are indicative only and do not constitute a binding offer. Final amounts may vary depending on the volume of work and the complexity involved.

Professional service charges for drafting, filing, and representation are separate from the statutory fees. The exact fee depends on the complexity of the case, disputed amount, and number of hearings required. Contact us for a detailed quote.

Get a free IT Notice Under Section 143(3) in Pune consultation - Call +91 945 945 6700 or WhatsApp us. No-obligation assessment.

Scrutiny Assessment Timeline

StageEstimated Timeline
ITR FiledFY 2024-25: by 31 July 2025 (or extended)
143(2) Notice IssuedWithin 3 months from end of FY of filing (e.g., by 30 June 2026)
First Response / Document Submission15-30 days from notice (e-Proceedings portal)
AO Queries and SubmissionsMultiple rounds over 3-9 months; each query has a deadline
Virtual Hearing (If Scheduled)During proceedings; CA/advocate attends via Form 26
143(3) Order PassedWithin 12 months from end of AY (e.g., by 31 March 2027 for AY 2025-26)
Appeal to CIT(A) (If Additions)Form 35 within 30 days of order + stay of demand application
ITAT Appeal (If Needed)Within 60 days of CIT(A) order | ITAT Pune Bench

Pune Processing Note: Under the Faceless Assessment Scheme (Section 144B), scrutiny is conducted by NFAC - the AO may be anywhere in India. All proceedings are on incometax.gov.in. Appeals go to CIT(A)/JC(A) Pune or ITAT Pune Bench. Total scrutiny lifecycle: 6-18 months from 143(2) notice to 143(3) order. Add 6-24 months for CIT(A) appeal. Add 12-36 months for ITAT. Every query has a deadline (15-30 days) - missing a single deadline gives AO the right to proceed with Best Judgment Assessment. Patron manages the complete lifecycle from its Wagholi office.

Key Benefits

Why Choose Patron for Scrutiny Defence in Pune

Pune Tax Office Expertise

CA team has represented hundreds of scrutiny assessments across all Pune circles - salaried, business, professional, and corporate. We understand CASS selection patterns for Pune profiles.

Faceless Assessment Specialists

All e-Proceedings on incometax.gov.in: document uploads, written submissions, virtual hearing preparation, and adjournment management. Every submission with indexed annexures and legal references.

CA + Advocate Team

Scrutiny responses by CA team (factual, numerical). Appeals before CIT(A) and ITAT Pune require advocate representation. Patron has both - seamless transition from response to appeal.

Transfer Pricing & Corporate

For MIDC manufacturers and Hinjewadi IT companies: TP documentation, benchmarking, and DRP submissions - the most complex scrutiny cases in Pune.

Trusted by Pune Taxpayers

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From Hinjewadi IT employees facing HRA scrutiny to MIDC manufacturers with transfer pricing adjustments, Patron manages scrutiny responses with professional submissions and appeal support. Offices in Pune, Mumbai, Delhi, and Gurugram.

Limited vs Complete Scrutiny

FactorLimited ScrutinyComplete Scrutiny
ScopeOnly specific issue in noticeEntire return - all heads, deductions, credits
AO Scope ExpansionOnly with written PCIT approvalFull scope from the start
Document RequirementOnly related to specific issueAll financial documents, books, bank statements
Typical Pune CaseHinjewadi employee HRA; Baner freelancer deductionCamp trader cash deposits; MIDC company TP
Duration3-6 months typically6-18 months
Addition RiskLower (focused issue)Higher (multiple potential additions)

Related Services for Pune Taxpayers

Pune taxpayers facing scrutiny often need:

Legal and Compliance Framework

Section 143(2): Scrutiny notice. Within 3 months from end of FY of return filing. Notice beyond this is time-barred.

Section 143(3): Final assessment order. Within 12 months from end of AY (Section 153).

Section 144B: Faceless Assessment Scheme. All scrutiny via NFAC - digital, anonymous, DIN-tracked.

Section 144: Best Judgment Assessment for non-response. Inflated demand.

Section 270A: Penalty 50% of tax (underreporting) or 200% (misreporting).

Section 271(1)(b)/272A: Rs 10,000 per non-compliance.

Appeal: CIT(A)/JC(A) Form 35 within 30 days. ITAT Pune within 60 days. DRP for TP draft orders within 30 days.

Portal: incometax.gov.in

Jurisdiction: NFAC (faceless); PCIT/CIT Pune (Aayakar Bhavan, Shivaji Nagar); ITAT Pune Bench.

FAQs - IT Notice Under Section 143(3) in Pune

Common questions about scrutiny assessment, CASS selection, faceless assessment, and appeals for Pune taxpayers

Quick Answers

Scrutiny notice aaya hai, kya karein? Portal pe check karo (incometax.gov.in > e-Proceedings). Notice download karo. Limited ya complete scrutiny hai dekho. Documents prepare karo. CA se written submission draft karwao. Deadline ke andar portal pe upload karo. Virtual hearing attend karo. Cooperate karo.

Kitna time lagta hai scrutiny? 6-18 mahine. 143(2) notice se 143(3) order tak. Appeal laga hua ho toh CIT(A) mein 6-24 mahine aur.

Kya scrutiny matlab mujhse galti hui? Nahi. Scrutiny ek verification process hai. CASS randomly bhi select karta hai. Cooperate karo, documents do, sahi response file karo.

Respond to Scrutiny Before Best Judgment Assessment

Every scrutiny query has a 15-30 day deadline. Missing a single deadline gives the AO the right to proceed with Best Judgment Assessment (Section 144) - resulting in demands 2-10 times your actual liability.

Under faceless assessment, there is no face-to-face interaction to explain delays. The system is deadline-driven. A thorough first response is the best strategy - it prevents additions of lakhs that take years to reverse through appeal. The professional fee (Rs 5,000-50,000) is a fraction of the potential addition. Respond immediately, professionally, and completely.

Get Expert Scrutiny Defence in Pune

A scrutiny assessment under Section 143(3) requires systematic, professional, and timely response. For Pune taxpayers - whether a Hinjewadi employee facing HRA queries, a Camp trader under cash deposit scrutiny, an MIDC manufacturer with transfer pricing issues, or a Baner freelancer questioned on expenses - the quality of written submissions determines the outcome.

Patron Accounting's Pune office at RTC Silver, Wagholi provides dedicated scrutiny response services - from notice analysis and document compilation to written submissions, e-Proceedings management, virtual hearing representation, and post-order appeal filing at CIT(A) Pune and ITAT Pune Bench.

With 15+ years of income tax practice and 10,000+ businesses served, Patron Accounting LLP is a trusted CA firm for scrutiny defence across Pune, Mumbai, Delhi, and Gurugram.

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Content Created: 23 March 2026  |  Last Updated: 23 March 2026  |  Next Review: September 2026  |  Reviewed By: CA & CS Team, Patron Accounting LLP

This page on IT Notice Under Section 143(3) in Pune is reviewed monthly. Content covers Section 143(2) notice, Section 143(3) assessment order, Section 144B Faceless Assessment, CASS selection triggers, limited vs complete scrutiny, Section 144 Best Judgment, Section 270A penalty (50%/200%), appeal path CIT(A)/ITAT Pune, DRP for transfer pricing, and NFAC e-Proceedings. Freshness Tier 1.

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