GST Annual Returns (GSTR-9 / GSTR-9C) in Pune - File with Expert CA Support

Pune is Maharashtra's second-largest commercial centre with two CGST Commissionerates (Pune-I and Pune-II) under the CGST & Customs Pune Zone, and a Maharashtra GST (SGST) Pune District office (mahagst.gov.in). IT companies in Hinjewadi and Kharadi with large ITC claims, manufacturers at Chakan MIDC and MIDC Bhosari dealing with Reverse Charge Mechanism (RCM) on metal scrap and transport, and D2C brands across Pune must all file accurate GST annual returns. The GST Audit Commissionerate, Pune conducts audits based on GSTR-9/9C filings, making accuracy critical. Learn more about GST Returns across India.

Late filing attracts Rs 200/day capped at 0.25% of turnover under Section 47 of the CGST Act, 2017. Patron Accounting's Pune office provides end-to-end GST annual return services. After filing GSTR-9/9C, Pune businesses also benefit from GST Audit support and Private Limited Company Compliance services.

Content is reviewed quarterly for accuracy.

GSTR-9 is mandatory for all regular GST-registered taxpayers in Pune with aggregate annual turnover exceeding Rs 2 crore. For FY 2024-25, the government has exempted taxpayers with turnover up to Rs 2 crore from filing GSTR-9.

IT companies in Hinjewadi IT Park and Kharadi providing software services with export turnover, zero-rated supplies, and multi-GSTIN registrations across states must file GSTR-9 for each GSTIN separately. See GST Registration in Pune for new registrations.

Manufacturing companies at Chakan MIDC and MIDC Bhosari with turnover above Rs 5 crore must file both GSTR-9 and GSTR-9C, reconciling production-linked ITC, job work returns, and RCM liabilities.

D2C brands and e-commerce sellers in Baner and Koregaon Park selling through marketplaces must reconcile TCS collected by e-commerce operators (GSTR-8) with their own GSTR-3B data in the annual return.

Multi-branch businesses with GSTINs in multiple states must file separate annual returns for each registration.

GSTR-1 filed returns: Monthly/quarterly outward supply returns for the entire financial year.

GSTR-3B filed returns: Monthly summary returns with tax liability and ITC claimed.

GSTR-2B statements: Auto-populated ITC statements for each month of the financial year.

Audited Financial Statements: Profit & Loss account and Balance Sheet (mandatory for GSTR-9C).

Purchase Register: Complete purchase details with supplier GSTIN, invoice numbers, and tax amounts.

Sales Register: Complete sales details with customer GSTIN, HSN codes, and tax amounts.

RCM Invoices: Reverse Charge invoices for transport, legal services, metal scrap, and other notified supplies.

ITC Register: Detailed ITC ledger showing eligible, ineligible, reversed, and reclaimed ITC.

All fees and charges listed are indicative only and do not constitute a binding offer. Final amounts may vary depending on the volume of work and the complexity involved.

Professional service charges for drafting, filing, and representation are separate from the statutory fees. The exact fee depends on the complexity of the case, disputed amount, and number of hearings required. Contact us for a detailed quote.

Get a free GST Annual Returns in Pune consultation - Call +91 945 945 6700 or WhatsApp us. No-obligation assessment.

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Trusted by Hyundai, Asian Paints, Bridgestone, and growing D2C brands across Maharashtra. With offices in Pune, Mumbai, Delhi, and Gurugram, Patron serves businesses across India. Our Pune office provides in-person support for GST annual return filing and audit preparedness.

Pune businesses filing GST annual returns often need complementary tax and compliance services:

• GST Returns in India - Monthly/quarterly GST return filing services across India
• GST Audit - GST audit services for businesses under CGST Commissionerate scrutiny
• Statutory Audit - Statutory audit required for GSTR-9C reconciliation
• Tax Audit - Tax audit under Section 44AB of the Income Tax Act
• Private Limited Company Compliance - Annual ROC filings and company compliance

Governing Act: Central Goods and Services Tax Act, 2017 (CGST Act) read with Maharashtra Goods and Services Tax Act, 2017 (MGST Act).

Section 44: Every registered person shall furnish an annual return for every financial year.

Section 47: Late fee for delayed filing - Rs 100/day CGST + Rs 100/day SGST = Rs 200/day total, capped at 0.25% of turnover in the state/UT.

Section 16(4): ITC for invoices of a financial year can be claimed until the due date of filing GSTR-3B for September of the following year or the date of filing annual return, whichever is earlier.

Rule 80: Prescribes Form GSTR-9 and GSTR-9C for annual return and reconciliation statement.

Turnover Thresholds (FY 2024-25): GSTR-9 mandatory above Rs 2 crore. GSTR-9C mandatory above Rs 5 crore. Below Rs 2 crore - optional.

Portal: GST - www.gst.gov.in

CGST Pune Zone: CGST Commissionerate Pune-I and Pune-II (punecgstcus.gov.in). CGST Audit Commissionerate, Pune.

Maharashtra GST: Pune District office (mahagst.gov.in).

The GSTR-9 due date is 31st December of the following financial year. Late filing attracts Rs 200/day, capped at 0.25% of turnover - for a Rs 10 crore Pune business, this means a maximum penalty of Rs 2.5 lakh. Additionally, the Section 16(4) deadline for claiming ITC is linked to the annual return filing date. Delayed filing can result in permanent loss of unclaimed ITC.

The CGST Audit Commissionerate, Pune actively uses GSTR-9/9C data for selecting audit cases. File accurately and on time.

GST annual return filing in Pune is a critical year-end compliance for every regular taxpayer with turnover above Rs 2 crore. Whether your business provides IT services from Hinjewadi, manufactures at Chakan MIDC, runs e-commerce operations from Baner, or manages multi-branch operations across Maharashtra, accurate GSTR-9 and GSTR-9C filing by 31st December is essential.

Patron Accounting, with its Pune office at RTC Silver, Wagholi, provides end-to-end GST annual return services - from system-computed download and ITC reconciliation to GSTR-9C preparation and portal submission.

With 15+ years of experience, 10,000+ businesses served, and a 4.9 Google rating, Patron Accounting LLP is a trusted CA and CS firm for GST compliance across Pune, Mumbai, Delhi, and Gurugram.