Payroll Services in Hyderabad: CA-Managed Salary Processing and Compliance

Hyderabad's workforce spans over 15 lakh IT professionals in HITEC City and Gachibowli, thousands of pharma researchers and production staff in Genome Valley, rapidly scaling startup teams in Madhapur, retail and trading employees in Secunderabad, and manufacturing workers in Medchal-Malkajgiri. Each segment has unique payroll requirements: IT companies need CTC structuring with HRA optimisation (Hyderabad now qualifies for 50% HRA exemption from 2026), pharma companies need shift-based payroll with overtime computation, startups need scalable payroll that triggers EPF/ESI registration as headcount grows, and traders need basic salary processing with Telangana PT compliance. Learn more about Payroll Services across India.

Patron Accounting's CA-managed payroll service handles the entire cycle: employee onboarding data collection, CTC breakup design, monthly salary computation with all statutory deductions, challan preparation and deposit (TDS by 7th, EPF/ESI by 15th), payslip generation, quarterly TDS return (Form 24Q) filing, annual Form 16 preparation, and full-and-final settlement for exits. The same CA team manages your accounting in Hyderabad, GST, and ITR - creating a unified compliance ecosystem where payroll data flows seamlessly into financial statements.

Content is reviewed quarterly for accuracy.

IT and SaaS Companies in HITEC City and Gachibowli: Software companies with 20-500+ employees need structured CTC with HRA optimisation (50% metro from 2026), NPS employer contribution, ESOP taxation, and TDS computation across old and new tax regimes. Form 16 must reflect all perquisites and deductions accurately. Patron structures IT company payroll for maximum tax efficiency.

Pharma and Biotech in Genome Valley: Drug manufacturers and research labs with shift-based workers, lab technicians, and management staff. Payroll includes shift differentials, overtime computation per Factories Act, ESI for eligible workers, and EPF for all. Telangana minimum wage compliance is critical for production floor staff.

Startups in Madhapur and T-Hub: Early-stage companies scaling rapidly. At 10 employees, ESI registration triggers. At 20 employees, EPF registration triggers. Many Hyderabad startups miss these thresholds and face backdated liability. Patron monitors headcount and triggers statutory registrations proactively. See Startup Registration for new ventures.

Trading and Retail in Secunderabad: Shops and commercial establishments with 5-50 staff. Telangana Shops and Establishments Act requires registration, working hour compliance, and record maintenance. Payroll includes minimum wages, PT, and overtime for extended-hour businesses.

Staffing and Contract Labour Agencies: Third-party payroll for contract workers deployed across Hyderabad IT parks, warehouses, and industrial sites. Requires separate EPF/ESI codes, contractor compliance, and client billing reconciliation.

Manufacturing in Medchal-Malkajgiri: Factory workers, supervisors, and management staff. Payroll includes minimum wages per Telangana schedule, overtime (Factories Act), bonus (Payment of Bonus Act), and gratuity tracking. Labour inspector-ready registers maintained.

• Employee PAN and Aadhaar: For TDS computation and UAN/ESIC registration
• Bank Account Details: For salary credit (NEFT/RTGS file preparation)
• Appointment Letter with CTC: Salary structure and components for payroll configuration
• Attendance and Leave Data: Monthly attendance, leave taken, overtime hours (from biometric/HRMS/manual)
• Tax Declaration (Form 12BB): Employee's investment declarations for TDS computation under old regime
• UAN and ESIC Number: For existing employees. New employees get UAN/ESIC created by Patron
• EPFO and ESIC Registration: Company's EPF code and ESIC code. If not registered, Patron registers when threshold triggers
• TAN (Tax Deduction Account Number): For TDS deposit and Form 24Q filing

All fees and charges listed are indicative only and do not constitute a binding offer. Final amounts may vary depending on the volume of work and the complexity involved.

Professional service charges for drafting, filing, and representation are separate from the statutory fees. The exact fee depends on the complexity of the case, disputed amount, and number of hearings required. Contact us for a detailed quote.

Get a free Payroll Services consultation - Call +91 945 945 6700 or WhatsApp us. No-obligation assessment.

10,000+ Businesses Served | 4.9 Google Rating | 50,000+ Documents Filed | 15+ Years

"Patron manages our 45-person payroll including EPF, ESI, TDS, and Telangana PT. Form 16 is always ready by the first week of June. Zero compliance issues in 3 years."

- IT Company, HITEC City

With offices in Pune, Mumbai, Delhi, and Gurugram, Patron serves Hyderabad through a digital-first CA team.

• Payroll Services in India - National-level payroll processing and compliance
• Income Tax Return in Hyderabad - Employee ITR filing from payroll data
• GST Registration in Hyderabad - Business registration and compliance
• Pvt Ltd Registration in Hyderabad - Company incorporation

• EPF & Miscellaneous Provisions Act, 1952 (12% + 12% on basic + DA, 20+ employees)
• ESI Act, 1948 (0.75% + 3.25% on gross, employees below Rs 21,000, 10+ employees)
• Income Tax Act - TDS on Salary (Section 192, monthly deposit by 7th, Form 24Q quarterly)
• Telangana Professional Tax Act (max Rs 2,500/year, monthly deduction by employer)
• Telangana Shops and Establishments Act (registration per premises, working hours, leave)
• Payment of Wages Act, 1936 (salary by 7th/10th of month)
• Minimum Wages Act, 1948 (Telangana minimum wages per schedule)
• Payment of Bonus Act, 1965 (8.33% minimum, 20% maximum)
• Payment of Gratuity Act, 1972 (15 days salary per year after 5 years)
• Social Security Code, 2020 (notified November 2025 - consolidates EPF/ESI/Gratuity)

Penalties:

• Late EPF: 12% interest/year + damages up to 25%
• Late TDS: 1.5%/month interest + Rs 200/day penalty
• Late ESI: 12% interest/year
• Non-registration under Shops Act: Fine per Telangana rules

Authority: EPFO - epfindia.gov.in | ESIC - esic.gov.in | IT Department - incometax.gov.in | Telangana CT - tgct.gov.in

Every month of non-compliant payroll accumulates liability. Late EPF deposit attracts 12% annual interest plus damages up to 25% of the arrear. Late TDS attracts 1.5% per month plus Rs 200/day penalty. Telangana PT non-deposit risks state tax authority notices. Missing Shops Act registration invites labour inspector fines. For Hyderabad companies with 10+ employees, statutory compliance is not optional - it is mandatory with real financial consequences. Patron's CA manages payroll compliance from month one. Start now.

Payroll services in Hyderabad cover the complete salary processing and statutory compliance cycle - from CTC structuring for HITEC City IT professionals and shift-based payroll for Genome Valley pharma to startup scaling compliance in Madhapur and Telangana-specific PT, Shops Act, and minimum wage adherence. CA-managed payroll ensures zero missed deadlines, accurate deductions, and seamless integration with accounting and tax filings.

Patron Accounting serves Hyderabad businesses through a digital-first CA team backed by offices in Pune, Mumbai, Delhi, and Gurugram. Your dedicated CA manages salary processing, EPF/ESI/TDS deposits, Form 24Q returns, Form 16 generation, and labour law compliance.

Patron Accounting LLP has served 10,000+ businesses, filed 50,000+ documents, and maintained a 4.9 Google rating across 15+ years of chartered accountancy practice.